"I haven't tried it on a non multi clip sequence"
if it were me, id try that.
if that doesn't work, then maybe simply collapsing the multiclips isn't enough, and you have to completely "un-multiclip" them.
to do that you need to run your sequence though Media Manager:
-Create Offline
-Dont delete unused
-Base Media File names on Existing
- *** Don't Include Multiclip Angles
that last is the important step,
then when you get your offline sequence, just re-connect to your files.
or you could just trash your prefs before you export, but that seems like a bad workaround to me.
BTW, i dont know if this will help the sync issue or not, but that filter isn't too demanding.
you should up your RT audio track number in your user prefs, then you wont get the red render bar.
FCP is by default set to 8 tracks.
been that way for 13 years, and computers are a tad more powerful these days
nick