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But it looks like I can't save a track layout with different colors, or have some layouts showing waveforms and others not showing waveforms.
Not colours no but waveforms yes.
Simply turn the waveforms on then resize the tracks manually using the mouse pointer inbetween the track patching on the left.
Make the tracks you don't wish to see waveform on as small as they will go and it turns the waveform off.
FCP handles waveform better than Avid and once its written them to the cache it updates really quickly unlike Avid with constantly has to update.
I would like to see more labeling functions in FCP - its been on the wish list for years!
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