Was the footage shot at 25 fps? If it was shot at 24 fps and you made an error in creating the 25 fps .mov file from it, it probably has a doubled frame every second.
Play that 25 fps .mov file in QuickTime and advance frame-by-frame. Are there doubled frames?
If the 25 fps .mov file really has 25 different frames per second then you can conform it using Cinema Tools or QT Edit to 24 fps. This will slightly slow the movie -- 104% duration -- including the sound. So pitches will drop.
Instead you can use Compressor to semi-conform it by the method you described: "so source frames play at 24 fps". This way the picture gets conformed and it has 104% duration. The sound also has 104% duration, but Compressor has maintained the original sound pitch (a small miracle of sampling). See
old post. More details in another
old strand.
Since Compressor used that way keeps all your frames (perhaps recompressed) and adds no new frames, the jerk you're seeing is either in what you gave to Compressor, or in how you're playing the Compressor product.
Dennis Couzin
Berlin, Germany