I was able to apply a match move to a matte and to a piece of video containing a matte, so maybe I'm not understanding what it is you're trying to do.
I put the original video on one layer (tattoo'd arm). Applied Motion Tracking/Analyze Motion to it and tracked the tattoo.
I placed another piece of video above the tattoo video and drew a matte so that only a part of the clip was visible.
Then I applied a Motion Tracking/Match Move to the matte'd clip and dragged the Analyze Motion behavior icon onto the Match Move source well.
The top clip follows the track of the tattoo and replaces it with the video contained in the mask.
Was this what you're trying to do, or is it more complicated than that?
Andy