Setting saturation to 0 in the Color Corrector 3-Way filter will remove all residual color. There are other FCP filters that do this, but Color Corrector 3-Way is a
wholesome filter.
It's probably OK to wait till you're finished to remove the residual color, but if it annoys you, or if you're very cautious, you can apply the filter early, and even reapply it after some effect reintroduces color.
Dennis Couzin
Berlin, Germany